Add Sirius Annotations

Missing values in the Sirius file create empty character values "" in the annotation, while missing features have NA values. All are transformed to "" later in add_qfeatures.

Usage

addSiriusAnnotations(
  qfeatures,
  siriusFile,
  rowData_col = "Alignment ID",
  sirius_col = "featureId",
  siriusFileColumnName = NULL
)

Arguments

qfeatures

dataset

siriusFile

file path

rowData_col

character Qfeatures column to match

sirius_col

character Sirius column to match

siriusFileColumnName

One of "NPC class", "NPC superclass", "NPC pathway", "ClassyFire subclass", "ClassyFire class", "ClassyFire superclass". Defaults to "ClassyFire superclass" if not specified.

Value

qfeatures object