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Read MS-DIAL Output File into a QFeatures Object

readMSDial.Rd

This function reads the output file from MS-DIAL and converts it into a QFeatures object.

Usage

readMSDial(file, version)

Arguments

file

A string with the path to the MS-DIAL output file.

version

A character string specifying the version of MS-DIAL used to generate the file. This parameter is currently not used.

Value

A QFeatures object containing:

  • An assay named "exampleAssay" with the metabolite counts.

  • Row data (feature metadata) extracted from the input file.

  • Column data (sample metadata) extracted from the input file.

See also

QFeatures for more information on the QFeatures class. SummarizedExperiment for details on the underlying data structure.

Examples